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Processing method	electron tomography subtomogram averaging single particle reconstruction helical reconstruction electron crystallography

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Entry	Title Data Release Date Last Update Submission Date Authors Processing Site EMPIAR-ID
Article	Journal Name PubMed ID Country
Sample	Component Species Aggregation State Molecular Weight (MDa)
Experiment	Cryogen Name Instrument for Vitrification Specimen Holder Specimen Temperature Microscope Accelerating Voltage Electron Source Detector
Processing	Method Resolution Resolution Method CTF correction 3D reconstruction Algorithm Software fo 3D reconstruction Model PDB ID Software for modeling

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Showing 1 - 50 of 55 items for (author: nakamura & r)

EMDB-37465:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-37466:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8wdu:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8wdv:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-34741:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-34742:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11 focused on RBD and NIV-11 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-8hgl:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-8hgm:
Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-34530:
Membrane protein A
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-34531:
Membrane protein B
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-35713:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8iu0:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-33820:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 focused on RBD and NIV-8 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33821:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 1)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33822:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33823:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-10 focused on RBD and NIV-10 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33824:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-10 (state 1)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33825:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-10 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33826:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-10 (state 3)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33827:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-13 focused on RBD and NIV-13 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33828:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-13 (state 1)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33829:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-13 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33830:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-13 (state 3)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-7yh6:
Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-8
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-7yh7:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-34305:
the human PTH1 receptor bound to an intracellular biased agonist
Method: single particle / : Kobayashi K, Kusakizako T, Okamoto HH, Nureki O, Yamashita K, Nishizawa T, Kato HE

PDB-8gw8:
the human PTH1 receptor bound to an intracellular biased agonist
Method: single particle / : Kobayashi K, Kusakizako T, Okamoto HH, Nureki O

EMDB-34469:
Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

EMDB-34470:
Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

EMDB-34488:
Conformation 3 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

PDB-8h3m:
Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

PDB-8h3n:
Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

EMDB-34859:
Heteromeric ring comprised of peroxiredoxin from Thermococcus kodakaraensis (TkPrx) F42C/C46S/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F42C) and TkPrx C46S/F76C/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F76C) (Naph@(MIX|3:3))
Method: single particle / : Himiyama T, Hamaguchi T, Yonekura K, Nakamura T

PDB-8hla:
Heteromeric ring comprised of peroxiredoxin from Thermococcus kodakaraensis (TkPrx) F42C/C46S/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F42C) and TkPrx C46S/F76C/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F76C) (Naph@(MIX|3:3))
Method: single particle / : Himiyama T, Hamaguchi T, Yonekura K, Nakamura T

EMDB-15954:
Structure of the IFT-A complex; IFT-A2 module
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ

PDB-8bbe:
Structure of the IFT-A complex; IFT-A2 module
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ

PDB-8bbg:
Structure of the IFT-A complex; anterograde IFT-A train model
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ

EMDB-15955:
Structure of the IFT-A complex; IFT-A1 module
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ

PDB-8bbf:
Structure of the IFT-A complex; IFT-A1 module
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ

EMDB-24391:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 7.5
Method: single particle / : Godoy AS, Song Y, Nakamura AM, Noske GD, Gawriljuk VO, Fernandes RS, Oliva G

EMDB-24392:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU in BIS-Tris pH 6.0
Method: single particle / : Godoy AS, Song Y, Nakamura AM, Noske GD, Gawriljuk VO, Fernandes RS, Oliva G

PDB-7rb0:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 7.5
Method: single particle / : Godoy AS, Song Y, Nakamura AM, Noske GD, Gawriljuk VO, Fernandes RS, Oliva G

PDB-7rb2:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU in BIS-Tris pH 6.0
Method: single particle / : Godoy AS, Song Y, Nakamura AM, Noske GD, Gawriljuk VO, Fernandes RS, Oliva G

EMDB-23786:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 6.0
Method: single particle / : Godoy AS, Song Y, Nakamura AM, Noske GD, Gawriljuk VO, Fernandes RS, Oliva G

PDB-7me0:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 6.0
Method: single particle / : Godoy AS, Song Y, Nakamura AM, Noske GD, Gawriljuk VO, Fernandes RS, Oliva G

EMDB-22808:
Myosin XI-F-actin complex
Method: helical / : Gong R, Alushin GM

PDB-7kch:
Myosin XI-F-actin complex
Method: helical / : Gong R, Alushin GM

EMDB-30029:
Structure of the human homo-hexameric LRRC8D channel at 4.36 Angstroms
Method: single particle / : Nakamura R, Kasuya G, Yokoyama T, Shirouzu M, Ishitani R, Nureki O

PDB-6m04:
Structure of the human homo-hexameric LRRC8D channel at 4.36 Angstroms
Method: single particle / : Nakamura R, Kasuya G, Yokoyama T, Shirouzu M, Ishitani R, Nureki O

EMDB-21212:
Structure of CD20 in complex with rituximab Fab
Method: single particle / : Rohou A

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+Mar 5, 2020. Novel coronavirus structure data

+Jul 5, 2019. Downlodablable text data

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